| Room: | San Francisco | Montreal | Sydney |
| 7:00 - 12:00 | Registration |
| Session Chair: Alfonso Valencia |
| 8:45 - 9:00 | Announcements: ISCB - International Society for Computational Biology (B. Rost) |
| 9:00 - 9:50 | Keynote Lecture: Mihaela Zavolan. "Combining experimental and computational approaches to uncover miRNA-dependent gene regulation" |
| 10:00 - 11:00 | Regulation, Pathways, and Systems Biology III (Chair: Alfonso Valencia) | Bioinformatics of Health and Disease, Biomarkers and Personalized Medicine II (Chair: Jaak Vilo) | TechTrack |
| (10:00) P40: J. Li. "The architecture of the gene regulatory networks for different tissues". | (10:00) P43. Y. Yamanishi: "Drug target prediction using adverse event report systems: a pharmacogenomic approach". | (10:00 - 10:25) T10: "Pathway Studio is a platform for integrating predicted and measured interactions, enabling pathway and network analysis of high-throughput molecular profiling data". Anton Yuryev, Sales Development Director, Pathway Studio, Elsevier. |
| (10:20) P41: N. Radde. "Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: An in depth comparison study". | (10:20) P44: T. Pham. "An accurate paired sample test for count data". | (10:30 - 10:55) T11: "Finding unusual peptides on the Internet using plain three letter sequence codes". Hans-Juergen Himmler, AKos Consulting & Solutions Deutschland GmbH, Steinen, Germany. |
| (10:40) P42 (H): C. Dieterich. "The mRNA-Bound Proteome and its Global Occupancy Profile on Protein-Coding Transcripts". | (10:40) P45: P. Sykacek. "Bayesian Assignment of Gene Ontology Terms to Gene Expression Experiments". | | | | |
|
| 11:00 - 11:30 | Coffee & Posters |
| 11:30 - 12:30 | Protein Interactions, Molecular Networks, and Proteomics II (Anton Feenstra) | Applied and Translational Bioinformatics (Chair: Ioannis Xenarios) | TechTrack |
| (11:30) P46: E. Glaab. "EnrichNet: network-based gene set enrichment analysis". | (11:30) P49: F. Buettner. "A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst". | (11:30) T12: "IBM Watson For Healthcare - the Technology" Bill Rapp, Chief Architect - Watson Solutions Development, Rochester, MN, USA. |
| (11:50) P47: T. Goldberg. "LocTree2 predicts localization for all domains of life". | (11:50) P50: H. Hatsuda. "Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process model". | |
| (12:10) P48: M. Kshirsagar. "Techniques to cope with missing data in host-pathogen protein interaction prediction". | (12:10) P51: S. Ng. "PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis". | |
| 12:30 - 14:00 | Lunch, Exhibition and Poster Viewing (Foyer) |
| 14:00 - 15:00 | Sequencing and Sequence Analysis III (Chair: Gaston Gonnet) | Mutations, Variations, and Genomics (Sven Bergmann) | |
| (14:00) P52: Y. Liu. "Long read alignment based on maximal exact match seeds". | (14:00) P55: L. Coin. "An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis". | |
| (14:20) P53: A. Schliep. "Indel-tolerant Read Mapping with Trinucleotide Frequencies using Cache-Oblivious kd-Trees". | (14:20) P56: L. Li. "Nonlinear dimension reduction with Wright-Fisher kernel for genotype aggregation and association mapping". | |
| (14:40) P54: T. Rausch. "DELLY: Structural variant discovery by integrated paired-end and split-read analysis". | (14:40) P57 (H): M. Linial. "Viral-host coevolution: Playing 'seek and hide'". | |
| 15:00 - 15:30 | Coffee |
| 15:30 - 15:40 | Presentation of ISMB/ECCB 2013 in Berlin (Anna Tramontano) |
| 15:40 - 16:00 | P58 (H): J. van Beek. "Modelling muscle energy transfer and whole body heat transport during a mountain time trial in the Tour the France". (Room: San Francisco) |
| 16:00 - 16:30 | Awards and closing remarks (Room: San Francisco) |
| ca. 16:30 | End of Conference |