| Room: | San Francisco | Montreal | Sydney |
| 7:30 - 17:00 | Registration |
| 8:45 - 9:00 | Announcements | | |
| Session Chair: Anna Tramontano |
| 9:00 - 9:50 | Keynote Lecture: Barry Honig, "Towards the Integration of Structural and Systems Biology: Structure-based Prediction of Protein-Protein Interactions on a Genome-Wide Scale". (Room: San Francisco) |
| 10:00 - 11:00 | Sequencing and Sequence Analysis II (Chair: Alex Bateman) | Databases, Ontologies, and Text Mining (Chair: Dietrich Rebholz-Schuhman) | Tech Track |
| (10:00) P23: Y. Wang. "MetaCluster 5.0: A two-round binning approach for metagenomic data for low-abundance species in a noisy sample". | (10:00) P26: M. Bell. "An approach to describing and analysing bulk biological annotation quality: A case study using UniProtKB". | (10:00 - 10:25) T5: "Using globally integrated public expression data to investigate your own hypotheses". Dr. Philip Zimmermann, CEO, NEBION, Zürich, Switzerland. |
| (10:20) P24: Y. Wu. "Stitching Gene Fragments with a Network Matching Algorithm Improves Gene Assembly for Metagenomics". | (10:20) P27: E. Iacucci. "ReLiance: A machine learning and literature-based prioritization of Receptor-Ligand pairings". | (10:30 - 11:00) T6: The SBKB Structural Biology Knowledgebase and the Protein Model Portal: a one-stop-resource to structure information". Jürgen Haas, SIB Swiss Institute of Bioinformatics & Yi-Ping Wendy Tao, RCSB PDB. |
| (10:40) P25: P. Bucher: "Genomic context analysis reveals dense interaction network between vertebrate ultra-conserved non-coding elements". | (10:40) P28: S. Pyysalo. "Event extraction across multiple levels of biological organization". |
| 11:00 - 11:30 | Coffee & Posters |
| 11:30 - 12:30 | Regulation, Pathways, and Systems Biology II (Chair: Martin Ebeling) | Structure, Dynamics and Function II (Chair: Christine Orengo) | Tech Track |
| (11:30) P29: H. Busch. "Boolean Approach to Signaling Pathway Modeling in HGF-induced Keratinocyte Migration". | (11:30) P32: L. Holm. "SANS: High-throughput retrieval of protein sequences allowing 50 % mismatches" | (11:30 - 12:25) T7: "Ion Torrent: Open, Accessible, Enabling". Matt Dyer, Ion Torrent Associate Director, South San Francisco, CA, USA. |
| (11:50) P30: S. Mizutani. "Relating drug-protein interaction network with drug side-effects". | (11:50) P33: F. Gaudreault. "Side-chain rotamer changes upon ligand binding: Common, crucial, correlate with entropy and rearrange hydrogen bonding". | |
| (12:10) P31 (H): P. Kim. "Tissue-Specific Alternative Splicing Remodels Protein-Protein Interaction networks". | (12:10) P59 (H) S. Berneche: "Modulation of ion binding affinity regulates C-type inactivation in K+ channels" | |
| 12:30 - 14:00 | Lunch, Exhibition and Poster Viewing (Foyer) |
| 14:00 - 15:20 | Bioinformatics of Health and Disease, Biomarkers and Personalized Medicine (Chair: Niko Beerenwinkel) | Bioinformatics Infrastructures (Chair: Anna Tramontano) | |
| (14:00) P35: S. Lee. "Gene-gene interaction analysis for the survival phenotype based on the Cox model". | (14:00) T8: "ELIXIR - a pan-European research infrastructure for biological information". Søren Brunak, Technical University of Denmark, Chair of the Interim ELIXIR Board. | |
| (14:20) P36: N. Pfeifer. "Improving HIV coreceptor usage prediction in the clinic using hints from next generation sequencing data". | |
| (14:40) P37: L. Shen. "From Phenotype to Genotype: An Association Study of Longitudinal Phenotypic Markers to Alzheimer’s Disease Relevant SNPs". | |
| (15:00) P38 (H): P. Van Loo. "The life history of 21 breast cancers". | (15:00) P39 (H): S.J. Schultheiss. "Persistence and Availability of Computational Web Resources". | |
| 15:20 - 15:50 | Coffee & Posters |
| Session Chair: Yves Moreau |
| 15:50 - 16:00 | Announcements: Basel Area |
| 16:00 - 16:30 | T9: "Putting IBM Watson to Work In Healthcare". Bill Rapp, IBM Software Group, Rochester, USA. (Room: San Francisco) |
| 16:30 - 17:30 | Keynote Lecture: Søren Brunak The EMBO Lecture: Extracting disease phenotypes and adverse drug reactions from electronic patient records (Room: San Francisco) |
| 17:30 - 19:30 | Poster Session II, drinks and exhibition (Foyer 2. and 3. floor) |
| 19:30 - 22:30 | Conference Dinner (sponsored by IBM), including a concert by Christoph Denoth |