| Room: | San Francisco | Montreal | Sydney |
| 7:30 - 17:00 | Registration |
| 8:45 - 9:00 | Welcome and Announcements | | |
| Session chair: Erik van Nimwegen |
| 9:00 - 9:50 | Keynote Lecture: Gene Myers. "Building Cellular Models with Light Microscopy". (Room: San Francisco) |
| 10:00 - 11:00 | Sequencing and Sequence Analysis I (Chair: Erik van Nimwegen) | Structure, Dynamics and Function I (Chair: Manuela Helmer Citterich) | Tech Track |
| (10:00) P3: A. Roth. "Decoding properties of tRNA leave a detectable signal in codon usage bias". | (10:00) P6: H. Lu. "A structure based protocol for learning the family specific mechanisms of membrane binding domains". | (10:00 - 10:25) T1: "Verification of Systems Biology Research in the Age of Collaborative - Competition". Jörg Sprengel, IBM, Switzerland (late program change) |
| (10:20) P4: M. Ruffalo. "Accurate Estimation of Short Read Mapping Quality for Next Generation Genome Sequencing". | (10:20) P7: F. Minhas. "Multiple instance learning of Calmodulin binding sites". | (10:30 - 11:00) T2: "Developing intelligent software for storing, retrieving and analyzing biological data is the core of bioinformatics – Are these assets protectable?" Julian Würmser, German and European Patent Attorney, Meissner Bolte & Partner, München, Germany" |
| (10:40) P5: M. Bresler. "Telescoper: De novo Assembly of Highly Repetitive Regions". | (10:40) P8 (H): A. Pandini. Detection of allosteric signal transmission by information-theoretic analysis of protein dynamics. |
| 11:00 - 11:30 | Coffee & Posters |
| 11:30 - 12:30 | Regulation, Pathways and System Biology I (Chair: Christian von Mering) | Bioimaging, Spatial-temporal Modeling and Data Visualization (Chair: Dagmar Iber) | TechTrack |
| (11:30) P9: M. Schelker. "Comprehensive estimation of input signals and dynamics in biochemical reaction networks". | (11:30) P12: K. Nieselt: "Reveal - Visual eQTL Analytics". | (11:30 - 11:55) T3: "Calling Pathogenic Variants from Exome Sequencing Data". Frank Schacherer, CTO, BIOBASE GmbH, Wolfenbüttel, Germany. |
| (11:50) P10: D. Machado. "Random Sampling of Elementary Flux Modes in Large-scale Metabolic Networks". | (11:50) P13: M. Klann. "Hybrid Spatial Gillespie and Particle Tracking Simulation". | |
| (12:10) P11: G. Basler. "Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks". | (12:10) P14: N. Scherf. "Imaging, quantification, and visualization of spatio-temporal patterning in mESC colonies under different culture conditions". | |
| 12:30 - 14:00 | Lunch, Exhibition and Poster Viewing (Foyer) |
| 14:00 - 15:20 | Protein Interactions, Molecular Networks, and Proteomics I (Chair: Burkhard Rost) | Evolution, Phylogeny, and Comparative Genomics (Chair: Marc Robinson-Rechavi) | TechTrack |
| (14:00) P15: Y. Shih. "Identifying Functional Modules in Protein Interaction Networks through Overlapping Markov Clustering". | (14:00) P19: E. Tannier. "Is the arrangement of the genes in ancestral chromosomes linear?". | (14:00 - 14:55) T4: "Better Computing for Better Bioinformatics". George Vacek, Convey Computer Corporation, Richardson, TX, USA. |
| (14:20) P16: T. Milenkovic. "Graphlet-based edge clustering reveals pathogen-interacting proteins". | (14:20) P20: M. Stolzer. "Inferring Duplications, Losses, Transfers, and Incomplete Lineage Sorting with Non-Binary Species Trees". |
| (14:40) P17: E. Pauwels. "Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers". | (14:40) P21: D. Sankoff. "Fractionation, rearrangement and subgenome dominance". (cancelled) |
| (15:00) P18 (H): D. Gfeller. "The multiple specificity landscape of peptide recognition domains". | (15:00) P22: O. Cohen. "Uncovering the co-evolutionary network among prokaryotic genes". | |
| 15:20 - 16:00 | Coffee & Posters |
| Session chair: Marc Robinson Rechavi |
| 16:00 - 16:50 | Keynote Lecture: Laurent Keller. "A Y-like social chromosome causes alternative colony organization in fire ants". (Room: San Francisco) |
| Session Chair: Torsten Schwede |
| 16:50 - 17:50 | Art & Science: Denis Noble & Christoph Denoth "The Music of Life" (Room: San Francisco) |
| 18:00 - 19:30 | Poster Session I, drinks and exhibition (Foyer 2. and 3. floor) |
| 19:30 - 23:00 | Basel @ night: explore Basel city |